PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591058.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 237aa    MW: 25788.1 Da    PI: 8.1595
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591058.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.83.9e-294102194
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++  +q+
  XP_013591058.1   4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPNHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWSQCQA 98 
                     6*********************9999767889**************************************************************9 PP

          DUF260  91 kael 94 
                     ++++
  XP_013591058.1  99 AVDA 102
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5953109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPNH  60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWSQCQAAV DAILNGLPIT HTPLASASAS  120
HQIIPPHRTY DIRHVAKDPT TGGDSSESLA LAPRVNGNKA KTKTGRLKRL AETVDFQLGE  180
CSHDTWQLQC SGATHGYGQL ALENVENRRE APLNQSSNLG RDDQVDTNEV GLELRLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591058.11e-177PREDICTED: LOB domain-containing protein 42
RefseqXP_013702892.11e-177PREDICTED: LOB domain-containing protein 42
RefseqXP_013702916.11e-177PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA301e-152LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0D3CYZ51e-177A0A0D3CYZ5_BRAOL; Uncharacterized protein
STRINGBra004315.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-153LOB domain-containing protein 42